Accession
MI0004721
Description
Physcomitrella patens
ppt-MIR1219d precursor miRNA
Sequence
12000
reads,
478.0
reads per million, 10 experiments
agaggcgugugcggagcaccgugagucuUUUCCUGCCUCUCACUAGCUUcuucccucccugccugagucgcagucugggagguaaggaGCUAUUGGUAGACAGGAAUAGcgcgcacguagucccacgcauguuucu
(((((((((((.((.((..((((.((((.((((((.((.(((.(((((((((.((((((.(.(((.....))).).)))))).))))))))).))).)).)))))).)).)).))))..)).)).)))))))))))
(((((((((((.((.((..((((.((((.((((((.((.(((.(((((((((.((((((.(.(((.....))).).)))))).))))))))).))).)).)))))).)).)).))))..)).)).)))))))))))
Structure
c a ac a - U C C C c u c a
agaggcgugug gg gc cgug gu cu UUCCUG CU UCA UAGCUUcuu ccuccc g cug g
||||||||||| || || |||| || || |||||| || ||| ||||||||| |||||| | ||| u
ucuuuguacgc cc ug gcac cg GA AAGGAC GA GGU AUCGaggaa ggaggg c gac c
a c au g c U A U U u u u g
Annotation confidence
High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
Chr13: 16867876-16868011 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1219d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1219d-5p
| Accession | MIMAT0003911 |
| Description | Physcomitrella patens ppt-miR1219d-5p mature miRNA |
| Sequence | 29 - UUUCCUGCCUCUCACUAGCUU - 49 |
| Evidence |
experimental
454 [2] |
Mature ppt-miR1219d-3p
| Accession | MIMAT0053657 |
| Description | Physcomitrella patens ppt-miR1219d-3p mature miRNA |
| Sequence | 89 - GCUAUUGGUAGACAGGAAUAG - 109 |
| Evidence |
experimental
unknown |
References
|
