Accession
MI0004722
Description
Physcomitrella patens
ppt-MIR1220a precursor miRNA
Sequence
acuucuugcacuccucuaucucccucggcaccugcacagugauuuucucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuccggcguagguguacacggccagcguugcuuaccaucuggaggauacccuugcucaaaccuacgacucugUUCCGGUGGUGAGGAAGAUAGaggaguucaagaagu
((((((((.((((((((((((.(((((.((((.(.(((((((..............))))(((((..(((.(((...............))))))....)))))((((((......(((.((.((..(((.((....)))))..)).)).)))...)))))).....))).).)))).))))).)))))))))))).))))))))
((((((((.((((((((((((.(((((.((((.(.(((((((..............))))(((((..(((.(((...............))))))....)))))((((((......(((.((.((..(((.((....)))))..)).)).)))...)))))).....))).).)))).))))).)))))))))))).))))))))
Structure
c c g u c gugauuuucucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuccggc guacac c c ug a a
acuucuug acuccucuaucu ccucg cacc g aca guaggu ggc ag gu cuu cc u
|||||||| |||||||||||| ||||| |||| | ||| |||||| ||| || || ||| ||
ugaagaac ugaggaGAUAGA GGAGU GUGG C Ugu caucca ucg uc ca gga gg c
u A G C U -------------------------------------------------------------cucag ---aac u c ua - u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The mature miRNA shown here is the predominant clone by deep sequencing [2]. Talmor-Neiman et al. identify an offset product by Northern blot [1].
Genome context
Chr03: 8658590-8658794 [+]
Database links
Mature ppt-miR1220a
| Accession | MIMAT0004831 |
| Description | Physcomitrella patens ppt-miR1220a mature miRNA |
| Sequence | 170 - UUCCGGUGGUGAGGAAGAUAG - 190 |
| Evidence |
experimental
454 [2] |
References
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