Accession
MI0004723
Description
Physcomitrella patens
ppt-MIR1220b precursor miRNA
Sequence
acuucucggacuccucuaucucccucggcaccugcacagucauuuuaucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuccggcguagguguacaaggccagcguugcuuaccaucuggaggauaccccugcucaaaccuacgacucugUUCCGGUGGUGAGGAAGAUAGaggaguucaagaagu
((((((.((((((((((((((.(((((.((((.(((.((((..........(((((((....(((((((.(((((.(..(.(((.((((((.((.....)).)))).)).)))...)..)))))).)).)))))....))))))).................)))).)))...)))).))))).)))))))))))))).))))))
((((((.((((((((((((((.(((((.((((.(((.((((..........(((((((....(((((((.(((((.(..(.(((.((((((.((.....)).)))).)).)))...)..)))))).)).)))))....))))))).................)))).)))...)))).))))).)))))))))))))).))))))
Structure
c c g --u c -------auuuuaucaa acgu - c c aa --a c - g c
acuucu ggacuccucuaucu ccucg cacc gca aguc uaucuuc uggug gc acguu g c uau cc augc gg a
|||||| |||||||||||||| ||||| |||| ||| |||| ||||||| ||||| || ||||| | | ||| || |||| || a
ugaaga cuugaggaGAUAGA GGAGU GUGG Ugu ucag auaggag accau cg ugcga c g aug gg ugcg cc c
a A G CCU c cauccaaacucgucccc gucu u u - cg aac u a g u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The mature miRNA shown here is the predominant clone by deep sequencing [2]. Talmor-Neiman et al. identify an offset product by Northern blot [1].
Genome context
Chr03: 8671417-8671621 [-]
Database links
Mature ppt-miR1220b
| Accession | MIMAT0004832 |
| Description | Physcomitrella patens ppt-miR1220b mature miRNA |
| Sequence | 170 - UUCCGGUGGUGAGGAAGAUAG - 190 |
| Evidence |
experimental
454 [2] |
References
|
