Stem-loop ppt-MIR535d

Accession

MI0004725

Description

Physcomitrella patens ppt-MIR535d precursor miRNA

Literature search

2 open access papers mention ppt-MIR535d
(3 sentences)

Sequence

4987511 reads, 205196.0 reads per million, 10 experiments

ggUGACAACGAGAGAGAGCACGCcggaaugcguucaugcagcgagugccuggagguguucgagcGUGCCCUCUCCCGUCGUCACC
((((((.(((.(((((.((((((..((((((.((((.(((.....))).)))).))))))..)))))).))))).))).))))))

Structure

      A   A     A      cg      g    u   g 
ggUGAC ACG GAGAG GCACGC  gaaugc uuca gca c
|||||| ||| ||||| ||||||  |||||| |||| ||| g
CCACUG UGC CUCUC CGUGcg  cuugug aggu cgu a
      C   C     C      ag      g    c   g 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr20: 10153735-10153819 [+]

Mature ppt-miR535d-5p

• Accession: MIMAT0003915
• Description: Physcomitrella patens ppt-miR535d-5p mature miRNA
• Sequence: 3 - UGACAACGAGAGAGAGCACGC - 23
• Evidence: experimental ; cloned [2], 454 [3]

Mature ppt-miR535d-3p

• Accession: MIMAT0053660
• Description: Physcomitrella patens ppt-miR535d-3p mature miRNA
• Sequence: 65 - GUGCCCUCUCCCGUCGUCACC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


3. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37