Stem-loop ppt-MIR1221

Accession

MI0004726

Description

Physcomitrella patens ppt-MIR1221 precursor miRNA

Sequence

aacugauggagaaacugccgUGGAUGGUGUGCAGGGUCAAAuacucuuuuggcuuucgauguguguuuuccgcuggcggcgguuugugucgaaguggugaccuuaguggguuggacacauaugaaucaggagcauuUGGCCCAUGCACAGUAUCUACGcaaguuccucggucugguu
(((((((.(((.((((..((((((((.(((((((((((((((.((((..(((..(((.((((((((((((((((((((.((.((((...)))).)).)).))..))))))..)))))))))))))))))))).))))))))).)))))).))))))))..)))).))).))).))))

Structure

    -   g   a    gc        G      -         a    uu   cu   g          --      --  -  g  g    u 
aacu gau gag aacu  cgUGGAUG UGUGCA GGGUCAAAu cucu  ugg  uuc auguguguuu  uccgcu  gg cg cg uuug  
|||| ||| ||| ||||  |||||||| |||||| ||||||||| ||||  |||  ||| ||||||||||  ||||||  || || || |||| g
uugg cug cuc uuga  GCAUCUAU ACACGU CCCGGUuua gagg  acu  aag uauacacagg  ggguga  cc gu gu aagc  
    u   g   c    ac        G      A         c    --   --   -          uu      uu  a  g  g    u 

Annotation confidence Not enough data

Genome context

Chr16: 6570760-6570936 [+]

Mature ppt-miR1221-5p

• Accession: MIMAT0003916
• Description: Physcomitrella patens ppt-miR1221-5p mature miRNA
• Sequence: 21 - UGGAUGGUGUGCAGGGUCAAA - 41
• Evidence: experimental ; Northern [1], 454 [2]

Mature ppt-miR1221-3p

• Accession: MIMAT0004834
• Description: Physcomitrella patens ppt-miR1221-3p mature miRNA
• Sequence: 137 - UGGCCCAUGCACAGUAUCUACG - 158
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37