Stem-loop ppt-MIR1222a

Accession

MI0004727

Description

Physcomitrella patens ppt-MIR1222a precursor miRNA

Sequence

147595 reads, 6280.0 reads per million, 10 experiments

cacgacauagcugguuguugugggcauucuugUGCUAGUAAACUCCUUCAUGCagaagugcgcuucuagcaccugcUUGAAGGAGUUCAUUGGUAUAUaaaugcccacaacaugaugaccgauuaacgug
((((...(((.(((((((((((((((((..(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))..))))))))))))).....)))).))).))))

Structure

    aca   c    -----             cu         A          U    aa    gc 
cacg   uag uggu     uguugugggcauu  ugUGCUAGU AACUCCUUCA GCag  gugc  u
||||   ||| ||||     |||||||||||||  ||||||||| |||||||||| ||||  ||||  u
gugc   auu gcca     acaacacccguaa  AUAUGGUUA UUGAGGAAGU cguc  cacg  c
    --a   a    guagu             aU         C          U    --    au 

Annotation confidence High

Genome context

Chr04: 9856968-9857097 [-]

Mature ppt-miR1222a-5p

• Accession: MIMAT0053661
• Description: Physcomitrella patens ppt-miR1222a-5p mature miRNA
• Sequence: 33 - UGCUAGUAAACUCCUUCAUGC - 53
• Evidence: experimental ; unknown

Mature ppt-miR1222a-3p

• Accession: MIMAT0003917
• Description: Physcomitrella patens ppt-miR1222a-3p mature miRNA
• Sequence: 77 - UUGAAGGAGUUCAUUGGUAUAU - 98
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37