Stem-loop ppt-MIR1223a

Accession

MI0004728

Description

Physcomitrella patens ppt-MIR1223a precursor miRNA

Sequence

agacuagagggucagcaagggugugugacucuauaauccaagcugugcuaguagaucgcuuaagaucgaagugcacaccaagcauucgaUUGUAGAGUCAUACACCUCCAcugacacuucuagucu
(((((((((((((((...((((((((((((((((((((.(((((((((.....((((......)))).....))))....))).)).))))))))))))))))))))...))))).))))))))))

Structure

          -     caa                    c  -   ----    uagua    gc 
agacuagagg gucag   gggugugugacucuauaauc aa gcu    gugc     gauc  u
|||||||||| |||||   |||||||||||||||||||| || |||    ||||     ||||   
ucugaucuuc caguc   UCCACAUACUGAGAUGUUag uu cga    cacg     cuag  u
          a     ACC                    c  a   acca    ugaag    aa 

Annotation confidence Not enough data

Genome context

Chr06: 2753805-2753930 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223a

Mature ppt-miR1223a

• Accession: MIMAT0003918
• Description: Physcomitrella patens ppt-miR1223a mature miRNA
• Sequence: 90 - UUGUAGAGUCAUACACCUCCA - 110
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37