Accession
MI0004728
Description
Physcomitrella patens
ppt-MIR1223a precursor miRNA
Sequence
57709
reads,
2549.0
reads per million, 10 experiments
agacuagagggucagcaAGGGUGUGUGACUCUAUAAUCcaagcugugcuaguagaucgcuuaagaucgaagugcacaccaagcauucgaUUGUAGAGUCAUACACCUCCAcugacacuucuagucu
(((((((((((((((...((((((((((((((((((((.(((((((((.....((((......)))).....))))....))).)).))))))))))))))))))))...))))).))))))))))
(((((((((((((((...((((((((((((((((((((.(((((((((.....((((......)))).....))))....))).)).))))))))))))))))))))...))))).))))))))))
Structure
- caA c - ---- uagua gc
agacuagagg gucag GGGUGUGUGACUCUAUAAUC aa gcu gugc gauc u
|||||||||| ||||| |||||||||||||||||||| || ||| |||| ||||
ucugaucuuc caguc UCCACAUACUGAGAUGUUag uu cga cacg cuag u
a ACC c a acca ugaag aa
Annotation confidence
High
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Genome context
Chr06: 2753805-2753930 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223a-5p
| Accession | MIMAT0061197 |
| Description | Physcomitrella patens ppt-miR1223a-5p mature miRNA |
| Sequence | 18 - AGGGUGUGUGACUCUAUAAUC - 38 |
| Evidence |
experimental
Illumina [1] |
Mature ppt-miR1223a-3p
| Accession | MIMAT0003918 |
| Description | Physcomitrella patens ppt-miR1223a-3p mature miRNA |
| Sequence | 90 - UUGUAGAGUCAUACACCUCCA - 110 |
| Evidence |
experimental
Northern [1], 454 [2] |
References
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