miRBase entry: bta-mir-221

Stem-loop bta-mir-221

Accession

MI0004743

Description

Bos taurus bta-mir-221 precursor miRNA mir-221

Gene
family?

RF00651; mir-221

Literature search

22 open access papers mention bta-mir-221
(60 sentences)

Sequence

122080 reads, 1360 reads per million, 71 experiments

ccaacauccaggucuagggcaugaaccuggcauacaauguagauuucuguguuuguugagcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccuggaaacacguucuu
......(((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))...........

Structure

-----ccaaca       cuag   a    -       u         auuu    -    g 
           uccaggu    ggc ugaa ccuggca acaauguag    cugu guuu  
           |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
           aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca cgag  
uucuugcacaa       ----   g    U       C         ----    a    u

Annotation confidence Not enough data

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Genome context

chrX: 104688654-104688763 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bta-miR-221

Accession	MIMAT0003529
Description	Bos taurus bta-miR-221 mature miRNA
Sequence	65 - AGCUACAUUGUCUGCUGGGUUU - 86
Evidence	experimental cloned [1]

References

PubMed ID: 17105755
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
"Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
"Physiol Genomics (2007) 29:35-43