Stem-loop bta-mir-221

Accession

MI0004743

Description

Bos taurus bta-mir-221 precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

305 open access papers mention bta-mir-221
(1346 sentences)

Sequence

1796551 reads, 816.0 reads per million, 321 experiments

ccaacauccaggucuagggcaugaACCUGGCAUACAAUGUAGAUUUCUguguuuguugagcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccuggaaacacguucuu
......(((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))...........

Structure

-----ccaaca       cuag   a    -       U         AUUU    -    g 
           uccaggu    ggc ugaA CCUGGCA ACAAUGUAG    CUgu guuu  
           |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
           aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca cgag  
uucuugcacaa       ----   g    U       C         ----    a    u 

Annotation confidence High

Genome context

X: 98126615-98126724 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-221

Mature bta-miR-221-5p

• Accession: MIMAT0050778
• Description: Bos taurus bta-miR-221-5p mature miRNA
• Sequence: 25 - ACCUGGCAUACAAUGUAGAUUUCU - 48
• Evidence: experimental ; cloned [1]

Mature bta-miR-221-3p

• Accession: MIMAT0003529
• Description: Bos taurus bta-miR-221-3p mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUU - 86
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43