miRBase entry: bta-mir-31

Stem-loop bta-mir-31


Accession
MI0004762
Description
Bos taurus bta-mir-31 precursor miRNA

Literature search
12 open access papers mention bta-mir-31
(44 sentences)

Sequence

28539 reads, 364 reads per million, 65 experiments
uccuguaacuuggaacuggagaggAGGCAAGAUGCUGGCAUAGCUguugaacugcgaaccugcuaugccaacauauugccaucucucuuguccg
...........(((.(.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).)))).

Structure
uccuguaacuu   a u       A     G   C         -U   gaa 
           gga c ggagagg GGCAA AUG UGGCAUAGC  guu   c
           ||| | ||||||| ||||| ||| |||||||||  |||    
           ccu g ucucucu ccguu uac accguaucg  caa   u
----------g   - u       a     a   a         uc   gcg 


Annotation confidence High
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Genome context
chr8: 22619494-22619587 [+]

Database links

Mature bta-miR-31

Accession MIMAT0003548
Description Bos taurus bta-miR-31 mature miRNA
Sequence 25 - AGGCAAGAUGCUGGCAUAGCU - 45
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43