Stem-loop dre-mir-727

Accession

MI0004771

Description

Danio rerio dre-mir-727 precursor miRNA mir-727

Gene
family

RF04073; mir-727

Literature search

1 open access papers mention dre-mir-727
(2 sentences)

Sequence

216 reads, 33 reads per million, 10 experiments

cuguaugucauuuUCAGUCUUCAAUUCCUCCCAGCccguacccaucgaaacugugaGUUGAGGCGAGUUGAAGACUUAaagugcuguacag
(((((((.((((((.((((((((((((..((((((.((((...........)))).)))).)).)))))))))))).)))))).)))))))

Structure

       u      C            CU  -    c    ccca 
cuguaug cauuuU AGUCUUCAAUUC  CC CAGC cgua    u
||||||| |||||| ||||||||||||  || |||| ||||    c
gacaugu gugaaA UCAGAAGUUGAG  GG GUUG gugu    g
       c      U            -C  A    a    caaa 

Annotation confidence Not enough data

Genome context

chr24: 26185410-26185500 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-727

Mature dre-miR-727-5p

• Accession: MIMAT0003755
• Description: Danio rerio dre-miR-727-5p mature miRNA
• Sequence: 14 - UCAGUCUUCAAUUCCUCCCAGC - 35
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-727-3p

• Accession: MIMAT0003756
• Description: Danio rerio dre-miR-727-3p mature miRNA
• Sequence: 57 - GUUGAGGCGAGUUGAAGACUUA - 78
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569