Stem-loop dre-mir-728

Accession

MI0004772

Description

Danio rerio dre-mir-728 precursor miRNA

Sequence

11243 reads, 8.0 reads per million, 186 experiments

caucuucugaggAAAUGUAGUAGACUAUAAGUAUAcagugaacaugaacguAUACUAAGUACACUACGUUUUCucaagaggug
((((((.((((((((((((((..(((...(((((((.((........))))))))).)))..)))))))))))))).))))))

Structure

      c              AG   AUA       a  gaa 
caucuu ugaggAAAUGUAGU  ACU   AGUAUAc gu   c
|||||| ||||||||||||||  |||   ||||||| ||    
guggag acuCUUUUGCAUCA  UGA   UCAUAug ca   a
      a              CA   --A       -  agu 

Annotation confidence High

Genome context

chr24: 26190552-26190634 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-728

Mature dre-miR-728-5p

• Accession: MIMAT0052791
• Description: Danio rerio dre-miR-728-5p mature miRNA
• Sequence: 13 - AAAUGUAGUAGACUAUAAGUAUA - 35
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-728-3p

• Accession: MIMAT0003757
• Description: Danio rerio dre-miR-728-3p mature miRNA
• Sequence: 52 - AUACUAAGUACACUACGUUUUC - 73
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569