Stem-loop dre-mir-729

Accession

MI0004773

Description

Danio rerio dre-mir-729 precursor miRNA mir-729

Gene
family

RF03699; mir-729

Literature search

1 open access papers mention dre-mir-729
(1 sentences)

Sequence

531724 reads, 62.0 reads per million, 219 experiments

cgucaagggccauccagugaccCGGGGUUGUAUUGUAACCAAGCUguaaguguccaugaugcAUGGGUAUGAUACGACCUGGGUuacagaauggugaug
((((....(((((.(.((((((((((.((((((((((.(((.((................)).))).)))))))))))))))))))).).)))))))))

Structure

    aagg     c a          G          A   A  Uguaagu 
cguc    gccau c gugaccCGGG UUGUAUUGUA CCA GC       g
||||    ||||| | |||||||||| |||||||||| ||| ||        
guag    uggua g cauUGGGUCC AGCAUAGUAU GGU cg       u
    ----     a a          -          G   A  uaguacc 

Annotation confidence High

Genome context

chr4: 13584483-13584581 [+]

Mature dre-miR-729-5p

• Accession: MIMAT0052792
• Description: Danio rerio dre-miR-729-5p mature miRNA
• Sequence: 23 - CGGGGUUGUAUUGUAACCAAGCU - 45
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-729-3p

• Accession: MIMAT0003758
• Description: Danio rerio dre-miR-729-3p mature miRNA
• Sequence: 63 - AUGGGUAUGAUACGACCUGGGU - 84
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569