Stem-loop dre-mir-15c

Accession

MI0004779

Description

Danio rerio dre-mir-15c precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

4 open access papers mention dre-mir-15c
(12 sentences)

Sequence

550004 reads, 2494.0 reads per million, 304 experiments

ccuuagaccgcuaAAGCAGCGCGUCAUGGUUUUCaacauuagagaaggugCAAGCCAUCAUUUGCUGCUCUAgaguuuuaagg
(((((((.(.(((.(((((((.((.(((((((.((.(.........).)).))))))).)).))))))).))).).)))))))

Structure

       c g   A       C  C       U  a auu 
ccuuaga c cua AGCAGCG GU AUGGUUU Ca c   a
||||||| | ||| ||||||| || ||||||| || |   g
ggaauuu g gAU UCGUCGU UA UACCGAA gu g   a
       u a   C       U  C       C  g aag 

Annotation confidence High

Genome context

chr15: 1543686-1543768 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15c

Mature dre-miR-15c-5p

• Accession: MIMAT0003764
• Description: Danio rerio dre-miR-15c-5p mature miRNA
• Sequence: 14 - AAGCAGCGCGUCAUGGUUUUC - 34
• Evidence: experimental ; cloned [1], Northern [1]

Mature dre-miR-15c-3p

• Accession: MIMAT0060905
• Description: Danio rerio dre-miR-15c-3p mature miRNA
• Sequence: 51 - CAAGCCAUCAUUUGCUGCUCUA - 72
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569