miRBase entry: xtr-mir-17

Stem-loop xtr-mir-17

Accession

MI0004803

Description

Xenopus tropicalis xtr-mir-17 precursor miRNA

Sequence

gucaagaguaauguCAAAGUGCUUACAGUGCAGGUAGUgauuuaacagaaccuACUGCAGUGAAGGCACUUGUagcauuauauugac
(((((..(((((((..((((((((.((.(((((.(((.(.(((....)))))))))))).)).))))))))...))))))).)))))

Structure

     ga       -CA        A  G     G   U a   a 
gucaa  guaaugu   AAGUGCUU CA UGCAG UAG g uuu a
|||||  |||||||   |||||||| || ||||| ||| | |||  
caguu  uauuacg   UUCACGGA GU ACGUC Auc c aag c
     -a       aUG        A  G     -   - -   a

Annotation confidence Not enough data

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Genome context

chr2: 120020382-120020468 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xtr-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-17-5p

Accession	MIMAT0003564
Description	Xenopus tropicalis xtr-miR-17-5p mature miRNA
Sequence	15 - CAAAGUGCUUACAGUGCAGGUAGU - 38
Evidence	experimental Northern [1]

Mature xtr-miR-17-3p

Accession	MIMAT0003565
Description	Xenopus tropicalis xtr-miR-17-3p mature miRNA
Sequence	54 - ACUGCAGUGAAGGCACUUGU - 73
Evidence	not_experimental

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112