Stem-loop xtr-mir-27b

Accession

MI0004810

Description

Xenopus tropicalis xtr-mir-27b precursor miRNA

Literature search

2 open access papers mention xtr-mir-27b
(3 sentences)

Sequence

178253 reads, 20521.0 reads per million, 4 experiments

accuuucuaccaaggugcAGAGCUUAGCUGAUUGGUGAACagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagagggc
.(((((((....(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))..)))))))..

Structure

-a       acca                 G    G       u  uug 
  ccuuucu    aggugcAGAGCUUAGCU AUUG UGAACag ga   a
  |||||||    ||||||||||||||||| |||| ||||||| ||   u
  ggagaga    uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
cg       --ag                 -    -       u  ccc 

Annotation confidence High

Genome context

1: 135663664-135663759 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-27b

Mature xtr-miR-27b-5p

• Accession: MIMAT0052089
• Description: Xenopus tropicalis xtr-miR-27b-5p mature miRNA
• Sequence: 19 - AGAGCUUAGCUGAUUGGUGAAC - 40
• Evidence: not_experimental

Mature xtr-miR-27b-3p

• Accession: MIMAT0003571
• Description: Xenopus tropicalis xtr-miR-27b-3p mature miRNA
• Sequence: 61 - UUCACAGUGGCUAAGUUCUGC - 81
• Evidence: not_experimental

References