miRBase entry: xtr-mir-98

Stem-loop xtr-mir-98


Accession
MI0004820
Description
Xenopus tropicalis xtr-mir-98 precursor miRNA


Sequence

ucugcccucuucaggaUGAGGUAGUAAGUUGUAUUGUUguggggguuuuuauuuccccaaauuaggagauaacuauacagcuuacugccuucccugcagcaugguaau
..((((.(((.((((..(((((((((((((((((.((((((((((........))))))..........)))).))))))))))))))))).)))).)).).))))..

Structure
uc    c -  u    aU                 U    ----------      uuu 
  ugcc u cu cagg  GAGGUAGUAAGUUGUAU GUUg          uggggg   u
  |||| | || ||||  ||||||||||||||||| ||||          ||||||    
  augg a ga gucc  uuccgucauucgacaua caau          accccu   u
ua    u c  c    -c                 u    agaggauuaa      uua 


Annotation confidence Not enough data
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Genome context
chr8: 8410552-8410659 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-98

Accession MIMAT0003581
Description Xenopus tropicalis xtr-miR-98 mature miRNA
Sequence 17 - UGAGGUAGUAAGUUGUAUUGUU - 38
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112