Stem-loop bmo-mir-1a

Accession

MI0004969

Description

Bombyx mori bmo-mir-1a precursor miRNA

Literature search

12 open access papers mention bmo-mir-1a
(61 sentences)

Sequence

1080721 reads, 148495 reads per million, 3 experiments

agccuugcgcaaguuCCGUGCUUCCUUACUUCCCAUagucauuguaaucauaUGGAAUGUAAAGAAGUAUGGAGcugcgcgggcg
.((((.(((((.((((((((((((.((((...(((((.............)))))...)))).))))))))))))))))))))).

Structure

a    u     a            C    UUC     gucau 
 gccu gcgca guuCCGUGCUUC UUAC   CCAUa     u
 |||| ||||| |||||||||||| ||||   |||||     g
 cggg cgcgu cGAGGUAUGAAG AAUG   GGUau     u
g    -     -            A    UAA     acuaa 

Annotation confidence Not enough data

Genome context

NW_004582020.1: 5628055-5628139 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-1a

Mature bmo-miR-1a-5p

• Accession: MIMAT0015222
• Description: Bombyx mori bmo-miR-1a-5p mature miRNA
• Sequence: 16 - CCGUGCUUCCUUACUUCCCAU - 36
• Evidence: experimental ; Illumina [4]

Mature bmo-miR-1a-3p

• Accession: MIMAT0004191
• Description: Bombyx mori bmo-miR-1a-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGGAG - 74
• Evidence: experimental ; Northern [2], cloned [3], Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


4. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997