Stem-loop bmo-mir-9a

Accession

MI0004972

Description

Bombyx mori bmo-mir-9a precursor miRNA

Literature search

8 open access papers mention bmo-mir-9a
(29 sentences)

Sequence

2712 reads, 415 reads per million, 3 experiments

aguagauugguuaauuaUCUUUGGUUAUCUAGCUGUAUGAguauuacugacgucAUAAAGCUAGGUUACCGGAGUUAagugccgucuaca
.((((((.(((...(((.(((((((.((((((((.(((((((.......)).))))).)))))))).))))))).)))..))))))))).

Structure

a      u   uaa   U       U        G     -  au 
 guagau ggu   uua CUUUGGU AUCUAGCU UAUGA gu  u
 |||||| |||   ||| ||||||| |||||||| ||||| ||  a
 caucug ccg   aAU GAGGCCA UGGAUCGA AUAcu ca  c
a      -   -ug   U       U        A     g  gu 

Annotation confidence High

Genome context

NW_004582229.1: 9274-9363 [-]

Mature bmo-miR-9a-5p

• Accession: MIMAT0004194
• Description: Bombyx mori bmo-miR-9a-5p mature miRNA
• Sequence: 18 - UCUUUGGUUAUCUAGCUGUAUGA - 40
• Evidence: experimental ; Northern [2], cloned [3], RT-PCR [4], Illumina [5]

Mature bmo-miR-9a-3p

• Accession: MIMAT0015225
• Description: Bombyx mori bmo-miR-9a-3p mature miRNA
• Sequence: 55 - AUAAAGCUAGGUUACCGGAGUUA - 77
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


4. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


5. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997