Stem-loop bmo-mir-14

Accession

MI0004974

Description

Bombyx mori bmo-mir-14 precursor miRNA

Literature search

9 open access papers mention bmo-mir-14
(56 sentences)

Sequence

2330 reads, 439 reads per million, 3 experiments

uugucauuuguguCGGGGAGAGAAAUCGACGAGGCUguuuuauuuagUCAGUCUUUUUCUCUCUCCUAuaugagugacau
.((((((((((((.(((((((((((..(((..(((((.......))))).)))..))))))))))).)))))))))))).

Structure

u            C           UC   GA     uu 
 ugucauuugugu GGGGAGAGAAA  GAC  GGCUg  u
 |||||||||||| |||||||||||  |||  |||||  u
 acagugaguauA CCUCUCUCUUU  CUG  CUgau  a
u            U           UU   -A     uu 

Annotation confidence High

Genome context

NW_004582033.1: 1273977-1274056 [-]

Mature bmo-miR-14-5p

• Accession: MIMAT0015227
• Description: Bombyx mori bmo-miR-14-5p mature miRNA
• Sequence: 14 - CGGGGAGAGAAAUCGACGAGGCU - 36
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-14-3p

• Accession: MIMAT0004196
• Description: Bombyx mori bmo-miR-14-3p mature miRNA
• Sequence: 48 - UCAGUCUUUUUCUCUCUCCUA - 68
• Evidence: experimental ; Northern [2], Illumina [3]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148