Stem-loop bmo-mir-263b

Accession

MI0004977

Description

Bombyx mori bmo-mir-263b precursor miRNA

Literature search

7 open access papers mention bmo-mir-263b
(28 sentences)

Sequence

56 reads, 10 reads per million, 3 experiments

agccgacgcuguucCUUGGCACUGGGAGAAUUCACaggaguuguaauucauacccGUGAAUUUCCCGAUGCCUUAGcucagugugguca
.(((.((((((......((((.(((((((.(((((.((.((((.....)).)))))))))))))))).))))......)))))))))..

Structure

-a   g      uucCUU    C       A     a  a  -  u 
  gcc acgcug      GGCA UGGGAGA UUCAC gg gu ug a
  ||| ||||||      |||| ||||||| ||||| || || || a
  ugg ugugac      CCGU GCCCUUU AAGUG cc ca ac u
ac   -      ucGAUU    A       -     -  -  u  u 

Annotation confidence Not enough data

Genome context

NW_004581687.1: 1534394-1534482 [+]

Mature bmo-miR-263b-5p

• Accession: MIMAT0004199
• Description: Bombyx mori bmo-miR-263b-5p mature miRNA
• Sequence: 15 - CUUGGCACUGGGAGAAUUCAC - 35
• Evidence: experimental ; cloned [3], Illumina [4]

Mature bmo-miR-263b-3p

• Accession: MIMAT0015229
• Description: Bombyx mori bmo-miR-263b-3p mature miRNA
• Sequence: 56 - GUGAAUUUCCCGAUGCCUUAG - 76
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


4. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997