Stem-loop bmo-mir-276

Accession

MI0004980

Description

Bombyx mori bmo-mir-276 precursor miRNA

Literature search

6 open access papers mention bmo-mir-276
(14 sentences)

Sequence

99692 reads, 18045 reads per million, 3 experiments

cugguaauuaccacuAGCGAGGUAUAGAGUUCCUACGuaugcuaacacugUAGGAACUUCAUACCGUGCUCUuggguuugccaa
.((((((...(((..((((.(((((.((((((((((((........)).)))))))))).))))).))))..)))..)))))).

Structure

c      uua   cu    A     A          -  aug 
 ugguaa   cca  AGCG GGUAU GAGUUCCUAC Gu   c
 ||||||   |||  |||| ||||| |||||||||| ||    
 accguu   ggu  UCGU CCAUA UUCAAGGAUg ca   u
a      -ug   UC    G     C          u  caa 

Annotation confidence Medium

Genome context

Unknown

Mature bmo-miR-276-5p

• Accession: MIMAT0004202
• Description: Bombyx mori bmo-miR-276-5p mature miRNA
• Sequence: 16 - AGCGAGGUAUAGAGUUCCUACG - 37
• Evidence: experimental ; Northern [2], RT-PCR [3], Illumina [4]

Mature bmo-miR-276-3p

• Accession: MIMAT0015232
• Description: Bombyx mori bmo-miR-276-3p mature miRNA
• Sequence: 51 - UAGGAACUUCAUACCGUGCUCU - 72
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


4. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148