Stem-loop bmo-mir-277

Accession

MI0004981

Description

Bombyx mori bmo-mir-277 precursor miRNA

Literature search

5 open access papers mention bmo-mir-277
(32 sentences)

Sequence

3111 reads, 538 reads per million, 3 experiments

uugauuacgccucgggguUCGUGCCAGGAGUGCGUUUGCaaagaggccgacauguuugcguuauugcaauguuaacacugUAAAUGCACUAUCUGGUACGACAucccggggcguguagcaac
.....(((((((((((((((((((((((((((((((((((.....(..(((((...((((....)))))))))..)..)))))))))))).)))))))))).))))))))))))).......

Structure

--uugau             -          -            aagag cc     guu    u 
       uacgccucggggu UCGUGCCAGG AGUGCGUUUGCa     g  gacau   ugcg u
       ||||||||||||| |||||||||| ||||||||||||     |  |||||   ||||  
       gugcggggcccuA AGCAUGGUCU UCACGUAAAUgu     c  uugua   acgu a
caacgau             C          A            ---ca aa     ---    u 

Annotation confidence High

Genome context

NW_004581681.1: 3821386-3821507 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-277

Mature bmo-miR-277-5p

• Accession: MIMAT0015233
• Description: Bombyx mori bmo-miR-277-5p mature miRNA
• Sequence: 19 - UCGUGCCAGGAGUGCGUUUGC - 39
• Evidence: experimental ; Illumina [4]

Mature bmo-miR-277-3p

• Accession: MIMAT0004203
• Description: Bombyx mori bmo-miR-277-3p mature miRNA
• Sequence: 81 - UAAAUGCACUAUCUGGUACGACA - 103
• Evidence: experimental ; Northern [2], RT-PCR [3], Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


4. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148