Stem-loop bmo-mir-282

Accession

MI0004983

Description

Bombyx mori bmo-mir-282 precursor miRNA

Literature search

3 open access papers mention bmo-mir-282
(10 sentences)

Sequence

124 reads, 27 reads per million, 3 experiments

cgggacuuugACCUAGCCUCUCCUUGGCUUUGUCUGUuucguuaguagcucagACAUAGCCUGAUAGAGGUUACGuuuugucccu
.(((((...(((.((((((((....((((.((((((..............)))))).))))....)))))))).)))..))))).

Structure

c     uuu   C        CCUU    U      Uuucgu 
 gggac   gAC UAGCCUCU    GGCU UGUCUG      u
 |||||   ||| ||||||||    |||| ||||||       
 cccug   uuG AUUGGAGA    CCGA ACAgac      a
u     -uu   C        UAGU    U      ucgaug 

Annotation confidence High

Genome context

NW_004581722.1: 736220-736304 [-]

Mature bmo-miR-282-5p

• Accession: MIMAT0004205
• Description: Bombyx mori bmo-miR-282-5p mature miRNA
• Sequence: 11 - ACCUAGCCUCUCCUUGGCUUUGUCUGU - 37
• Evidence: experimental ; cloned [3], Illumina [4]

Mature bmo-miR-282-3p

• Accession: MIMAT0015234
• Description: Bombyx mori bmo-miR-282-3p mature miRNA
• Sequence: 54 - ACAUAGCCUGAUAGAGGUUACG - 75
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 16972323
   Computational prediction of microRNA genes in silkworm genome
   "Tong CZ, Jin YF, Zhang YZ"
   "J Zhejiang Univ Sci B (2006) 7:806-816


2. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


4. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997