Accession
MI0004990
Description
Epstein Barr virus
ebv-mir-BART17 precursor miRNA
Sequence
guugaacaggauguggcacccUAAGAGGACGCAGGCAUACAAGguuauuacccaguccuUGUAUGCCUGGUGUCCCCUUAGUgggacgcaggccuagguagc
((((...(((.((((...(((((((.((((((((((((((((((............)))))))))))).)))))).))))).))..))))..)))...))))
((((...(((.((((...(((((((.((((((((((((((((((............)))))))))))).)))))).))))).))..))))..)))...))))
Structure
aac -a gca - A - uuauu
guug agg ugug cc cUAAG GGACGC AGGCAUACAAGg a
|||| ||| |||| || ||||| |||||| ||||||||||||
cgau ucc acgc gg GAUUC CCUGUG UCCGUAUGUucc c
gga gg -ag U C G ugacc
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The arm of the precursor miRNA giving rise to the mature sequence was verified using microarray hybridisation and Northern blot, but the extents of the mature miRNA shown here are predicted and not experimentally determined [1]. This sequence was named miR-BART8 by Grundhoff et al [1] but is not related to ebv-miR-BART8 (MIR:MI0003730). The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 139894-139995 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from ebv-mir-BART17
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BART17 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BART17-5p
| Accession | MIMAT0003715 |
| Description | Epstein Barr virus ebv-miR-BART17-5p mature miRNA |
| Sequence | 22 - UAAGAGGACGCAGGCAUACAAG - 43 |
| Evidence |
experimental
array [1], Northern [1], cloned [2] |
Mature ebv-miR-BART17-3p
| Accession | MIMAT0003716 |
| Description | Epstein Barr virus ebv-miR-BART17-3p mature miRNA |
| Sequence | 60 - UGUAUGCCUGGUGUCCCCUUAGU - 82 |
| Evidence |
experimental
array [1], Northern [1], cloned [2] |
References
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