Accession
MI0004993
Description
Epstein Barr virus
ebv-mir-BART20 precursor miRNA
Sequence
uacaggcguagggccuauugUAGCAGGCAUGUCUUCAUUCCugcguaccgaauggCAUGAAGGCACAGCCUGUUACCauuggcaccuuuuuuccaugua
((((((...((((((.((.(((((((((.(((((((((.((............)).)))))))))..))))))))).)).))).))).....)).))))
((((((...((((((.((.(((((((((.(((((((((.((............)).)))))))))..))))))))).)).))).))).....)).))))
Structure
- --cgu - u u -A U ugcgu
uaca gg agg gcc au gUAGCAGGC UGUCUUCAU CC a
|||| || ||| ||| || ||||||||| ||||||||| ||
augu cc ucc cgg ua CAUUGUCCG ACGGAAGUA gg c
a uuuuu a u C AC C uaagc
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The arm of the precursor miRNA giving rise to the mature sequence was verified using microarray hybridisation and Northern blot, but the extents of the mature miRNA shown here are predicted and not experimentally determined [1]. This sequence was named miR-BART18 by Grundhoff et al [1]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 148319-148417 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from ebv-mir-BART20
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ebv-miR-BART20-5p
| Accession | MIMAT0003719 |
| Description | Epstein Barr virus ebv-miR-BART20-5p mature miRNA |
| Sequence | 21 - UAGCAGGCAUGUCUUCAUUCC - 41 |
| Evidence |
experimental
array [1], Northern [1], cloned [2] |
Mature ebv-miR-BART20-3p
| Accession | MIMAT0003720 |
| Description | Epstein Barr virus ebv-miR-BART20-3p mature miRNA |
| Sequence | 56 - CAUGAAGGCACAGCCUGUUACC - 77 |
| Evidence |
experimental
array [1], Northern [1], cloned [2] |
References
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