Stem-loop bta-mir-10a

Accession

MI0005007

Description

Bos taurus bta-mir-10a precursor miRNA

Literature search

14 open access papers mention bta-mir-10a
(35 sentences)

Sequence

2598170 reads, 28525 reads per million, 70 experiments

gaucugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuugugaucacaaauucguaucuaggggaauauguaguugacauaaacacuccgcuc
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...)))........

Structure

----gauc   --c    uu        A    G     C          uaaggaa 
        ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
        |||   ||||  |||||||| |||| ||||| ||||||||||        
        aca   acag  gauguaua gggg aucua gcuuaaacac       u
cucgccuc   aau    uu        a    -     u          uaguguu 

Annotation confidence High

Genome context

chr19: 38713901-38714009 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-10a

Mature bta-miR-10a

• Accession: MIMAT0003786
• Description: Bos taurus bta-miR-10a mature miRNA
• Sequence: 22 - UACCCUGUAGAUCCGAAUUUGUG - 44
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677