Stem-loop bta-mir-127

Accession

MI0005008

Description

Bos taurus bta-mir-127 precursor miRNA

Literature search

14 open access papers mention bta-mir-127
(144 sentences)

Sequence

701921 reads, 7470 reads per million, 65 experiments

ugaucacugucuccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucuccucauc
.(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..)))........

Structure

-------u   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuccu   aa   --u      -----         G  U      cu  a 

Annotation confidence High

Genome context

chr21: 67708504-67708598 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-127

Mature bta-miR-127

• Accession: MIMAT0003787
• Description: Bos taurus bta-miR-127 mature miRNA
• Sequence: 55 - UCGGAUCCGUCUGAGCUUGGCU - 76
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677