Stem-loop bta-mir-545

Accession

MI0005023

Description

Bos taurus bta-mir-545 precursor miRNA

Literature search

11 open access papers mention bta-mir-545
(60 sentences)

Sequence

6598 reads, 5.0 reads per million, 284 experiments

cccagccuggcacauucguaggCCUCAGUAAAUGUUUAUUGGAUGaauaaaugaauggcucaUCAACAAACAUUUAUUGUGUGCCugcuaacgugaucuccacagg
.....((((((((.((.(((((((.((((((((((((....(((((.............)))))...)))))))))))).).)))))).)).))).....).))))

Structure

cccag    - -----   a  c      - U            AUUG     auaaa 
     ccug g     cac uu guaggC C CAGUAAAUGUUU    GAUGa     u
     |||| |     ||| || |||||| | ||||||||||||    |||||     g
     ggac c     gug aa cguCCG G GUUAUUUACAAA    CUacu     a
-----    a cucua   c  u      U U            -CAA     cggua 

Annotation confidence High

Genome context

X: 76853198-76853303 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-545

Mature bta-miR-545-5p

• Accession: MIMAT0003806
• Description: Bos taurus bta-miR-545-5p mature miRNA
• Sequence: 23 - CCUCAGUAAAUGUUUAUUGGAUG - 45
• Evidence: experimental ; cloned [1]

Mature bta-miR-545-3p

• Accession: MIMAT0003807
• Description: Bos taurus bta-miR-545-3p mature miRNA
• Sequence: 63 - UCAACAAACAUUUAUUGUGUGCC - 85
• Evidence: experimental ; Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677