Stem-loop bta-mir-22

Accession

MI0005041

Description

Bos taurus bta-mir-22 precursor miRNA mir-22

Gene
family

RF00653; mir-22

Literature search

21 open access papers mention bta-mir-22
(70 sentences)

Sequence

968575 reads, 17980 reads per million, 78 experiments

ggcugagccgcaguAGUUCUUCAGUGGCAAGCUUUAuguccugacccagcuaAAGCUGCCAGUUGAAGAACUGuugcccucugcc
(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))

Structure

   u   cc               -     A      u  ccu 
ggc gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguuGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 

Annotation confidence High

Genome context

chr19: 23514297-23514381 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-22

Mature bta-miR-22-5p

• Accession: MIMAT0003826
• Description: Bos taurus bta-miR-22-5p mature miRNA
• Sequence: 15 - AGUUCUUCAGUGGCAAGCUUUA - 36
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

Mature bta-miR-22-3p

• Accession: MIMAT0012536
• Description: Bos taurus bta-miR-22-3p mature miRNA
• Sequence: 53 - AAGCUGCCAGUUGAAGAACUG - 73
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677