Stem-loop bta-mir-425

Accession

MI0005047

Description

Bos taurus bta-mir-425 precursor miRNA mir-425

Gene
family

RF00803; mir-425

Literature search

5 open access papers mention bta-mir-425
(8 sentences)

Sequence

17849 reads, 307 reads per million, 74 experiments

gaaagcgcuuuggaAUGACACGAUCACUCCCGUUGAgugggcacccaagaagccAUCGGGAAUGUCGUGUCCGCCCagugcucuuuc
(((((.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).)))))

Structure

     c  u    aAU       U  C     UUGA    gcacc 
gaaag gc uugg   GACACGA CA UCCCG    gugg     c
||||| || ||||   ||||||| || |||||    ||||      
cuuuc cg gaCC   CUGUGCU GU AGGGC    UAcc     a
     u  u    CGC       -  A     ----    gaaga 

Annotation confidence High

Genome context

chr22: 51728006-51728092 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-425

Mature bta-miR-425-5p

• Accession: MIMAT0003832
• Description: Bos taurus bta-miR-425-5p mature miRNA
• Sequence: 15 - AUGACACGAUCACUCCCGUUGA - 36
• Evidence: experimental ; cloned [1]

Mature bta-miR-425-3p

• Accession: MIMAT0003833
• Description: Bos taurus bta-miR-425-3p mature miRNA
• Sequence: 55 - AUCGGGAAUGUCGUGUCCGCCC - 76
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43