Stem-loop bta-mir-30c

Accession

MI0005064

Description

Bos taurus bta-mir-30c precursor miRNA

Literature search

103 open access papers mention bta-mir-30c
(461 sentences)

Sequence

8477911 reads, 3246.0 reads per million, 321 experiments

cagacuguaaccaugccguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucgagguggCUGGGAGAGGGUUGUUUACUCCuucugccauggaaaacguc
..(((.((..(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))...)))))

Structure

ca   u  -aa     cc    ugu U       U   ACA         guga   c 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
  ||| ||   |||||  ||||   | ||||||| |||   |||||||||    ||| g
  cug ca   gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
--   -  aaa     --    uuC U       U   --A         ----   a 

Annotation confidence High

Comments

The mature miR-30c sequence identified by Sonstegard et al [1] has an additional G base at the 3' end, which conflicts with the draft genome sequence.

Genome context

3: 105457746-105457850 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-30c

Mature bta-miR-30c-5p

• Accession: MIMAT0003850
• Description: Bos taurus bta-miR-30c-5p mature miRNA
• Sequence: 26 - UGUAAACAUCCUACACUCUCAGCU - 49
• Evidence: experimental ; cloned [1]

Mature bta-miR-30c-3p

• Accession: MIMAT0060969
• Description: Bos taurus bta-miR-30c-3p mature miRNA
• Sequence: 65 - CUGGGAGAGGGUUGUUUACUCC - 86
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43