Stem-loop mtr-MIR395d

Accession

MI0005071

Description

Medicago truncatula mtr-MIR395d precursor miRNA

Literature search

5 open access papers mention mtr-MIR395d
(12 sentences)

Sequence

4040 reads, 29.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaauaucuauuuggucuaaaauccauuagaaaaauaguucuucuuaaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((...((((((...((((((..(((((......))))).))))))...)))))).)))))))))))))))))))))

Structure

                     Gca      uau      gg     aa 
gAGUUCCUUUGAACGCUUCAU   ugagaa   cuauuu  ucuaa  u
|||||||||||||||||||||   ||||||   ||||||  |||||   
CUCAAGGGGGUUUGUGAAGUA   auucuu   gauaaa  agauu  c
                     --a      cuu      -a     ac 

Annotation confidence High

Genome context

chr5: 16616400-16616494 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR395d

Mature mtr-miR395d-5p

• Accession: MIMAT0054749
• Description: Medicago truncatula mtr-miR395d-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395d-3p

• Accession: MIMAT0003857
• Description: Medicago truncatula mtr-miR395d-3p mature miRNA
• Sequence: 75 - AUGAAGUGUUUGGGGGAACUC - 95
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638