Stem-loop mtr-MIR395e

Accession

MI0005072

Description

Medicago truncatula mtr-MIR395e precursor miRNA

Literature search

5 open access papers mention mtr-MIR395e
(12 sentences)

Sequence

4112 reads, 30.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaauaucuaucuauuugguuuaaaauccauuaggauagauaguucuucuuaaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((....((((((((((((((...(((........)))...)))))))).)))))).....)))))))))))))))))))))

Structure

                     -Gcau      -        auu   uuu 
gAGUUCCUUUGAACGCUUCAU     gagaau aucuaucu   ugg   a
|||||||||||||||||||||     |||||| ||||||||   |||    
CUCAAGGGGGUUUGUGAAGUA     uucuug uagauagg   acc   a
                     aauuc      a        auu   uaa 

Annotation confidence High

Genome context

chr5: 16605860-16605959 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR395e

Mature mtr-miR395e-5p

• Accession: MIMAT0054750
• Description: Medicago truncatula mtr-miR395e-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395e-3p

• Accession: MIMAT0003858
• Description: Medicago truncatula mtr-miR395e-3p mature miRNA
• Sequence: 80 - AUGAAGUGUUUGGGGGAACUC - 100
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638