Stem-loop mtr-MIR395f

Accession

MI0005073

Description

Medicago truncatula mtr-MIR395f precursor miRNA

Literature search

5 open access papers mention mtr-MIR395f
(12 sentences)

Sequence

4124 reads, 30.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaaauaucucuuugguuuaaaauccauuagaaaagauaguauuuucuucuAUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((...(((((.(((((((.(((........)))..)))...))))...)))))...))))))))))))))))))))))

Structure

                      cau     --a    ---   -u   uuu 
gAGUUCCUUUGAACGCUUCAUG   gagaa   uauc   ucu  ugg   a
||||||||||||||||||||||   |||||   ||||   |||  |||    
CUCAAGGGGGUUUGUGAAGUAu   cuuuu   auag   aga  acc   a
                      cuu     aug    aaa   uu   uaa 

Annotation confidence High

Genome context

chr5: 16598925-16599022 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR395f

Mature mtr-miR395f-5p

• Accession: MIMAT0054751
• Description: Medicago truncatula mtr-miR395f-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395f-3p

• Accession: MIMAT0003859
• Description: Medicago truncatula mtr-miR395f-3p mature miRNA
• Sequence: 78 - AUGAAGUGUUUGGGGGAACUC - 98
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638