Stem-loop mtr-MIR395j

Accession

MI0005077

Description

Medicago truncatula mtr-MIR395j precursor miRNA

Literature search

5 open access papers mention mtr-MIR395j
(12 sentences)

Sequence

4512 reads, 40.0 reads per million, 110 experiments

gAGUUCCUCUGAAUGCUUCAAAcaugagacaaucuauauggauaguucuuguucaAUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((((.(((.(.((((....)))).)))).))))...))))))))))))))))))))

Structure

                    ---    u   a a    a 
gAGUUCCUCUGAAUGCUUCA   AAca gag c aucu u
||||||||||||||||||||   |||| ||| | ||||  
CUCAAGGGGGUUUGUGAAGU   uugu cuu g uagg a
                    Aac    u   - a    u 

Annotation confidence High

Genome context

chr5: 16671143-16671218 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR395j

Mature mtr-miR395j-5p

• Accession: MIMAT0054754
• Description: Medicago truncatula mtr-miR395j-5p mature miRNA
• Sequence: 2 - AGUUCCUCUGAAUGCUUCAAA - 22
• Evidence: experimental ; unknown

Mature mtr-miR395j-3p

• Accession: MIMAT0003863
• Description: Medicago truncatula mtr-miR395j-3p mature miRNA
• Sequence: 56 - AUGAAGUGUUUGGGGGAACUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638