Stem-loop mtr-MIR395m

Accession

MI0005080

Description

Medicago truncatula mtr-MIR395m precursor miRNA

Literature search

5 open access papers mention mtr-MIR395m
(12 sentences)

Sequence

4004 reads, 29.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaauaucuaucuauuuggucuaaaauccauuagaaaagauaguucuucuuaaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((....((((((((((.((((..(((........))).))))..)))).)))))).....)))))))))))))))))))))

Structure

                     -Gcau      -    -a    uu   ucu 
gAGUUCCUUUGAACGCUUCAU     gagaau aucu  ucua  ugg   a
|||||||||||||||||||||     |||||| ||||  ||||  |||    
CUCAAGGGGGUUUGUGAAGUA     uucuug uaga  agau  acc   a
                     aauuc      a    aa    -u   uaa 

Annotation confidence High

Genome context

chr5: 16576530-16576629 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR395m

Mature mtr-miR395m-5p

• Accession: MIMAT0054756
• Description: Medicago truncatula mtr-miR395m-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395m-3p

• Accession: MIMAT0003866
• Description: Medicago truncatula mtr-miR395m-3p mature miRNA
• Sequence: 80 - AUGAAGUGUUUGGGGGAACUC - 100
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638