Stem-loop mtr-MIR395n

Accession

MI0005081

Description

Medicago truncatula mtr-MIR395n precursor miRNA

Literature search

5 open access papers mention mtr-MIR395n
(12 sentences)

Sequence

4022 reads, 29.0 reads per million, 110 experiments

gAGUUCCUUUGAACGCUUCAUGcaugagaauaucuaucuauuuggucuaaaguccauuagaaaagauagccauuuuuucaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((....((((((..((((((......(((((......)))))..))))))..))))))...)))))))))))))))))))))

Structure

                     Gcau      au      auuugg     ag 
gAGUUCCUUUGAACGCUUCAU    gagaau  cuaucu      ucuaa  u
|||||||||||||||||||||    ||||||  ||||||      |||||   
CUCAAGGGGGUUUGUGAAGUA    uuuuua  gauaga      agauu  c
                     -acu      cc      ----aa     ac 

Annotation confidence High

Genome context

chr5: 16591743-16591843 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR395n

Mature mtr-miR395n-5p

• Accession: MIMAT0054757
• Description: Medicago truncatula mtr-miR395n-5p mature miRNA
• Sequence: 2 - AGUUCCUUUGAACGCUUCAUG - 22
• Evidence: experimental ; unknown

Mature mtr-miR395n-3p

• Accession: MIMAT0003867
• Description: Medicago truncatula mtr-miR395n-3p mature miRNA
• Sequence: 81 - AUGAAGUGUUUGGGGGAACUC - 101
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638