Stem-loop mtr-MIR395o

Accession

MI0005082

Description

Medicago truncatula mtr-MIR395o precursor miRNA

Literature search

5 open access papers mention mtr-MIR395o
(12 sentences)

Sequence

3697 reads, 27.0 reads per million, 110 experiments

gAGUUCCUCUGAACUCUUCAUCuaaagggcuauagcaagaaagaaaggaaaauccuuguaugAUGAAGUGUUUGGGGGAACUC
((((((((((((((.(((((((..(((((.......................)))))....))))))).))))))))))))))

Structure

              U       --ua     cuauagcaag 
gAGUUCCUCUGAAC CUUCAUC    aaggg          a
|||||||||||||| |||||||    |||||          a
CUCAAGGGGGUUUG GAAGUAg    uuccu          a
              U       uaug     aaaaggaaag 

Annotation confidence High

Genome context

chr5: 16556404-16556486 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR395o

Mature mtr-miR395o-5p

• Accession: MIMAT0054758
• Description: Medicago truncatula mtr-miR395o-5p mature miRNA
• Sequence: 2 - AGUUCCUCUGAACUCUUCAUC - 22
• Evidence: experimental ; unknown

Mature mtr-miR395o-3p

• Accession: MIMAT0003868
• Description: Medicago truncatula mtr-miR395o-3p mature miRNA
• Sequence: 63 - AUGAAGUGUUUGGGGGAACUC - 83
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638