Stem-loop cel-mir-793

Accession

MI0005194

Description

Caenorhabditis elegans cel-mir-793 precursor miRNA

Literature search

3 open access papers mention cel-mir-793
(3 sentences)

Sequence

8334 reads, 85 reads per million, 15 experiments

ugguugguaaaagucuguuuaacuauuguacaucacaauuuucacugcgaaaaauUGAGGUAUCUUAGUUAGACAGAcauauacuacaacca
(((((((((...(((((((((((((..((((.(((...(((((.....)))))..))).))))..)))))))))))))...)))..))))))

Structure

      --   aaa             uu    a   caa     a 
ugguug  gua   gucuguuuaacua  guac uca   uuuuc c
||||||  |||   |||||||||||||  |||| |||   ||||| u
accaac  cau   cAGACAGAUUGAU  UAUG AGU   aaaag g
      au   aua             UC    G   -ua     c 

Annotation confidence Not enough data

Genome context

chrX: 13857962-13858053 [+]

Mature cel-miR-793

• Accession: MIMAT0004228
• Description: Caenorhabditis elegans cel-miR-793 mature miRNA
• Sequence: 56 - UGAGGUAUCUUAGUUAGACAGA - 77
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179