Stem-loop cel-mir-799

Accession

MI0005200

Description

Caenorhabditis elegans cel-mir-799 precursor miRNA

Sequence

1211 reads, 25 reads per million, 13 experiments

guuuuucaauuuuuuucaccgguuuuaaaaagugguuucacauucaauaaagacaugUGAACCCUGAUAAAGCUAGUGGaaauaucggaaaac
(((((((.((..(((((((.(((((((...((.((((.(((((((......)).)))))))))))..))))))).))))))).)).)))))))

Structure

       a  uu       c       aaa  u    u     -  aa 
guuuuuc au  uuuucac gguuuua   ag gguu cacau uc  u
||||||| ||  ||||||| |||||||   || |||| ||||| ||   
caaaagg ua  aaaGGUG UCGAAAU   UC CCAA GUgua ag  a
       c  -u       A       -AG  -    -     c  aa 

Annotation confidence Low

Genome context

chrX: 8600643-8600735 [-]

Mature cel-miR-799

• Accession: MIMAT0004234
• Description: Caenorhabditis elegans cel-miR-799 mature miRNA
• Sequence: 58 - UGAACCCUGAUAAAGCUAGUGG - 79
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179