Stem-loop osa-MIR810a

Accession

MI0005229

Description

Oryza sativa osa-MIR810a precursor miRNA

Literature search

3 open access papers mention osa-MIR810a
(4 sentences)

Sequence

328421 reads, 1475.0 reads per million, 142 experiments

aauauucacuaugguugccaucauaagcccaccacauguggcucgcaugcuuaaauaacuaacggcauaauuagaucacUUGAUGACGACGUAUAUCGGUguucgcuauauauacuaucuacugguaaguauauauagcgAACACCGAUAUGCGUCAUCAUCaagugauuuaauuaugccguuaguuaagcaugcgagccacauguggugagcuuacgaugacgaccacaguuuguu
.......(((.((((((.((((.(((((.((((((((((((((((((((((((....(((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((....))).))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).))))).)))).)))))).))).....

Structure

aauauuc   a      c    a     c                        aaua                             C                             -   u 
       acu ugguug cauc uaagc caccacauguggcucgcaugcuua    acuaacggcauaauuagaucacUUGAUGA GACGUAUAUCGGUguucgcuauauauacu auc a
       ||| |||||| |||| ||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  
       uga accagc guag auucg gugguguacaccgagcguacgaau    ugauugccguauuaauuuagugaaCUACU CUGCGUAUAGCCACAAgcgauauauauga ugg c
--uuguu   c      a    c     a                        ----                             A                             a   u 

Annotation confidence Low

Comments

miR810a was misnamed miR566 by Luo et al [1].

Genome context

Unknown

Mature osa-miR810a-5p

• Accession: MIMAT0004045
• Description: Oryza sativa osa-miR810a-5p mature miRNA
• Sequence: 80 - UUGAUGACGACGUAUAUCGGU - 100
• Evidence: experimental ; cloned [1], Northern [1]

Mature osa-miR810a-3p

• Accession: MIMAT0055999
• Description: Oryza sativa osa-miR810a-3p mature miRNA
• Sequence: 141 - AACACCGAUAUGCGUCAUCAUC - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116