Stem-loop osa-MIR812a

Accession

MI0005233

Description

Oryza sativa osa-MIR812a precursor miRNA

Literature search

10 open access papers mention osa-MIR812a
(18 sentences)

Sequence

204301 reads, 794.0 reads per million, 142 experiments

accuccgucccaaaauaagugcaguuuuacacuauucaucuccaaaGUUUGAUCGUUCGUCUUAUUUGAAaauuuuuuaugauuacuauuuuuauuguuauuacaugauaaaacaugaauaguauuuuaugugugacuaauuuuuuuaaaaauuuucauaaauuuuucAAAUAAGACGGACGGUUAAACGUUggacacggauuuucacggcugcacuuauuuugaaacggaggu
((((((((..((((((((((((((((.......((((...(((((.((((((((((((((((((((((((((...(((((((.....(((((((..((((((((((.((((((.((.....)).)))))))))))).)))).....)))))))..))))))).)))))))))))))))))))))))))).)))))...))))......))))))))))))))))..))))))))

Structure

        cc                uuacacu    auc     a                          uuu       uuacu       ---uu    -      g      c  g 
accuccgu  caaaauaagugcaguu       auuc   uccaa GUUUGAUCGUUCGUCUUAUUUGAAaa   uuuauga     auuuuua     guua uuacau auaaaa au a
||||||||  ||||||||||||||||       ||||   ||||| ||||||||||||||||||||||||||   |||||||     |||||||     |||| |||||| |||||| || a
uggaggca  guuuuauucacgucgg       uagg   aggUU CAAAUUGGCAGGCAGAAUAAAcuuuu   aaauacu     uaaaaau     uaau agugug uauuuu ug u
        aa                -cacuuu    cac     G                          --u       ---uu       uuuuu    c      -      a  a 

Annotation confidence Medium

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

1: 33947151-33947384 [+]

Mature osa-miR812a-5p

• Accession: MIMAT0056000
• Description: Oryza sativa osa-miR812a-5p mature miRNA
• Sequence: 47 - GUUUGAUCGUUCGUCUUAUUUGAA - 70
• Evidence: experimental ; unknown

Mature osa-miR812a-3p

• Accession: MIMAT0004049
• Description: Oryza sativa osa-miR812a-3p mature miRNA
• Sequence: 169 - AAAUAAGACGGACGGUUAAACGUU - 192
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116