Stem-loop osa-MIR812b

Accession

MI0005234

Description

Oryza sativa osa-MIR812b precursor miRNA

Literature search

9 open access papers mention osa-MIR812b
(15 sentences)

Sequence

144879 reads, 602.0 reads per million, 142 experiments

guauccguaucuacGUUUGACCGUUCGUCUUAUUUGAAaauuuuaugaaaagauuaaaaaaauagucacgcauaaaguaauauucauguuuuaucaucuaauaacaauaaaaauacuaaucauuaaaaauuuucAAAUAAGACGGACGGUUAAACGUUggacacgaauac
((((.(((.(((((((((((((((((((((((((((((((((((((((...(((((......)))))........((((.......((((............)))).......))))..))))..))))))))))))))))))))))))))))))).)))).))).))))

Structure

    c   a    -                               --    aaagauuaaaaaaauagucacgcauaa    auauuca    uuauc 
guau cgu ucua cGUUUGACCGUUCGUCUUAUUUGAAaauuuu  auga                           agua       uguu     a
|||| ||| |||| |||||||||||||||||||||||||||||||  ||||                           ||||       ||||      
caua gca aggU GCAAAUUGGCAGGCAGAAUAAAcuuuuaaaa  uacu                           ucau       acaa     u
    a   c    U                               au    -------------------------aa    aaaaaua    uaauc 

Annotation confidence Medium

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

2: 1936324-1936493 [-]

Mature osa-miR812b-5p

• Accession: MIMAT0056001
• Description: Oryza sativa osa-miR812b-5p mature miRNA
• Sequence: 15 - GUUUGACCGUUCGUCUUAUUUGAA - 38
• Evidence: experimental ; unknown

Mature osa-miR812b-3p

• Accession: MIMAT0004050
• Description: Oryza sativa osa-miR812b-3p mature miRNA
• Sequence: 135 - AAAUAAGACGGACGGUUAAACGUU - 158
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116