Stem-loop osa-MIR812c

Accession

MI0005235

Description

Oryza sativa osa-MIR812c precursor miRNA

Literature search

9 open access papers mention osa-MIR812c
(15 sentences)

Sequence

187403 reads, 649.0 reads per million, 142 experiments

gguuuccgcgucuaauGUUUGACCGUCCAUCUUAUUUGAaaaaaauuaaaaacauaagucaugcauaaaauauuauucauguuuuaucauuuaacaauaauaauaacaccaaucauaaaaaaaaauuauAUAAGACGGACGGUUAAACGUUGGacacggaaacc
((((((((.(((((((((((((((((((.((((((.(((............((....)).(((.(((((((((.....))))))))))))...................................))).)))))).))))))))))))))))))).))))))))

Structure

        c                   A      U   --------------aaaaaauuaaaaacauaaguc   c         u 
gguuuccg gucuaauGUUUGACCGUCC UCUUAU UGA                                   aug auaaaauau a
|||||||| ||||||||||||||||||| |||||| |||                                   ||| ||||||||| u
ccaaaggc caGGUUGCAAAUUGGCAGG AGAAUA auu                                   uac uauuuugua u
        a                   C      u   aaaaaaaaauacuaaccacaauaauaauaacaauu   -         c 

Annotation confidence Medium

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

6: 26260307-26260470 [+]

Mature osa-miR812c-5p

• Accession: MIMAT0056002
• Description: Oryza sativa osa-miR812c-5p mature miRNA
• Sequence: 17 - GUUUGACCGUCCAUCUUAUUUGA - 39
• Evidence: experimental ; unknown

Mature osa-miR812c-3p

• Accession: MIMAT0004051
• Description: Oryza sativa osa-miR812c-3p mature miRNA
• Sequence: 130 - AUAAGACGGACGGUUAAACGUUGG - 153
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116