Stem-loop osa-MIR812d

Accession

MI0005236

Description

Oryza sativa osa-MIR812d precursor miRNA

Literature search

10 open access papers mention osa-MIR812d
(16 sentences)

Sequence

67871 reads, 265.0 reads per million, 142 experiments

cguauccaacauuugaucaucugccuuauucgaaaaauuuauaaaaaaaaacAAGUCACGCAUAAAGUAUUAuucauguuuuaucauauaagaacaauaaaaauacuaaucauaaaaaaaguAAAUAAGACGGACGGUUAAACGUUggacacg
(((.((((((.(((((((.((((.((((((.......(((((............((...))....((((((.((..((((((........))))))..)).))))))....))))).......)))))).)))).))))))).)))))).)))

Structure

   a      a       a    c      cgaaaaa     --------------------------------------aaaaaaaaacAA  C 
cgu uccaac uuugauc ucug cuuauu       uuuau                                                  GU  
||| |||||| ||||||| |||| ||||||       |||||                                                  || A
gca aggUUG AAAUUGG AGGC GAAUAA       aaaua                                                  CG  
   c      C       C    A      Augaaaa     cuaaucauaaaaauaacaagaauauacuauuuuguacuuAUUAUGAAAUA  C 

Annotation confidence Low

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

7: 22395223-22395375 [+]

Mature osa-miR812d-5p

• Accession: MIMAT0056003
• Description: Oryza sativa osa-miR812d-5p mature miRNA
• Sequence: 53 - AAGUCACGCAUAAAGUAUUA - 72
• Evidence: experimental ; unknown

Mature osa-miR812d-3p

• Accession: MIMAT0004052
• Description: Oryza sativa osa-miR812d-3p mature miRNA
• Sequence: 123 - AAAUAAGACGGACGGUUAAACGUU - 146
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116