Stem-loop osa-MIR812e

Accession

MI0005237

Description

Oryza sativa osa-MIR812e precursor miRNA

Literature search

9 open access papers mention osa-MIR812e
(15 sentences)

Sequence

161138 reads, 643.0 reads per million, 142 experiments

guuuuagugcccaacUUUGACCGUCCGUCUUAUUUGAAAAuuuuuuuauuacuauuuuuauuguuauuagaugauaaaauauaaauauuacuucaugcgugacuuaauuuuuaaaaaaauuucauaaaauuuuuAAAUAAGACGGACGGUUAAACGUUggacacggaaac
(((((.(((.((((((((((((((((((((((((((((((((((...........((((((((((....))))))))))..((((.((((..(((....)))..)))).))))............))))))))))))))))))))))))))))).))))).))).)))))

Structure

     a   c     -                             uuuauuacuauuuuuauuguuauuagaugauaaaaua    u    cu   u 
guuuu gug ccaac UUUGACCGUCCGUCUUAUUUGAAAAuuuu                                     uaaa auua  uca g
||||| ||| ||||| |||||||||||||||||||||||||||||                                     |||| ||||  |||  
caaag cac ggUUG AAAUUGGCAGGCAGAAUAAAuuuuuaaaa                                     auuu uaau  agu c
     g   a     C                             -------------------------uacuuuaaaaaa    u    uc   g 

Annotation confidence Medium

Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

8: 16401146-16401315 [+]

Mature osa-miR812e-5p

• Accession: MIMAT0056004
• Description: Oryza sativa osa-miR812e-5p mature miRNA
• Sequence: 16 - UUUGACCGUCCGUCUUAUUUGAAAA - 40
• Evidence: experimental ; unknown

Mature osa-miR812e-3p

• Accession: MIMAT0004053
• Description: Oryza sativa osa-miR812e-3p mature miRNA
• Sequence: 135 - AAAUAAGACGGACGGUUAAACGUU - 158
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116