Stem-loop osa-MIR815a

Accession

MI0005242

Description

Oryza sativa osa-MIR815a precursor miRNA

Literature search

2 open access papers mention osa-MIR815a
(2 sentences)

Sequence

60507 reads, 145.0 reads per million, 142 experiments

uuuuuuuagacucuuaauuucuuuuucuaggauGAACUCUUAGGGUGUGUUugaggagAAGGGGAUUGAGGAGAUUGGGgaga
(((((((((.((((((((((((((((((.((((..((((...))))..))))..))))))))))))))).))).)))))))))

Structure

         a   -               -a    GA    U 
uuuuuuuag cuc uuaauuucuuuuucu  ggau  ACUC  
||||||||| ||| |||||||||||||||  ||||  |||| U
agagGGGUU GAG AGUUAGGGGAAgagg  uUUG  UGGG  
         A   G               ag    UG    A 

Annotation confidence Low

Comments

miR815 was misnamed miR574 by Luo et al [1]. The identified mature sequence maps many times to the rice genome, and overlaps annotated transposon and siRNA loci. This entry may therefore represent an siRNA rather than a miRNA, and may be removed from future database releases.

Genome context

5: 29746632-29746714 [+]

Mature osa-miR815a-5p

• Accession: MIMAT0056008
• Description: Oryza sativa osa-miR815a-5p mature miRNA
• Sequence: 34 - GAACUCUUAGGGUGUGUU - 51
• Evidence: experimental ; unknown

Mature osa-miR815a-3p

• Accession: MIMAT0004058
• Description: Oryza sativa osa-miR815a-3p mature miRNA
• Sequence: 59 - AAGGGGAUUGAGGAGAUUGGG - 79
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116