Stem-loop osa-MIR817

Accession

MI0005246

Description

Oryza sativa osa-MIR817 precursor miRNA

Sequence

9417 reads, 32.0 reads per million, 139 experiments

uaucucaaucaggccucaaguugguguccgucaugGAUGAUGGUCAUCCGUGACGGGCUCCAACUUGAGGCCCGAUUGAgaua
((((((((((.(((((((((((((.(((((((((((((((...))))))))))))))).))))))))))))).))))))))))

Structure

          a             u               U 
uaucucaauc ggccucaaguugg guccgucaugGAUGA  
|||||||||| ||||||||||||| ||||||||||||||| G
auagAGUUAG CCGGAGUUCAACC CGGGCAGUGCCUACU  
          C             U               G 

Annotation confidence Low

Comments

miR817 was misnamed miR578 by Luo et al [1].

Genome context

2: 12276365-12276447 [-]

Mature osa-miR817-5p

• Accession: MIMAT0056012
• Description: Oryza sativa osa-miR817-5p mature miRNA
• Sequence: 36 - GAUGAUGGUCAUCCGUGACGGGC - 58
• Evidence: experimental ; unknown

Mature osa-miR817-3p

• Accession: MIMAT0004062
• Description: Oryza sativa osa-miR817-3p mature miRNA
• Sequence: 59 - UCCAACUUGAGGCCCGAUUGA - 79
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116