miRBase entry: osa-MIR818a

Dead hairpin entry

Stem-loop osa-MIR818a


Accession
MI0005247
Description
Oryza sativa osa-MIR818a precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search
10 open access papers mention osa-MIR818a
(19 sentences)

Sequence

53514 reads, 201.0 reads per million, 142 experiments
ucccuccaucccauaguauaagggauuugggaaugaugugacauauccuAGUAUAAUGAAUCUGGACAaaccgucuguccaaauucauuguccuaguaugugucacaucuacucaaAAUCCCUUAUAUUAUGGGACGGaaggga
(((((((.(((((((((((((((((((((((...((((((((((((.((((.(((((((((.((((((.......)))))).))))))))).)))).))))))))))))..))).)))))))))))))))))))).)).)))))

Structure
     -  a                    -   aau            c    U         C      aa 
ucccu cc ucccauaguauaagggauuu ggg   gaugugacauau cuAG AUAAUGAAU UGGACA  c
||||| || |||||||||||||||||||| |||   |||||||||||| |||| ||||||||| ||||||  c
aggga GG AGGGUAUUAUAUUCCCUAAa cuc   cuacacugugua gauc uguuacuua accugu  g
     a  C                    a   -au            u    c         a      cu