Stem-loop osa-MIR818a

Accession

MI0005247

Description

Oryza sativa osa-MIR818a precursor miRNA

Literature search

10 open access papers mention osa-MIR818a
(19 sentences)

Sequence

53514 reads, 201.0 reads per million, 142 experiments

ucccuccaucccauaguauaagggauuugggaaugaugugacauauccuAGUAUAAUGAAUCUGGACAaaccgucuguccaaauucauuguccuaguaugugucacaucuacucaaAAUCCCUUAUAUUAUGGGACGGaaggga
(((((((.(((((((((((((((((((((((...((((((((((((.((((.(((((((((.((((((.......)))))).))))))))).)))).))))))))))))..))).)))))))))))))))))))).)).)))))

Structure

     -  a                    -   aau            c    U         C      aa 
ucccu cc ucccauaguauaagggauuu ggg   gaugugacauau cuAG AUAAUGAAU UGGACA  c
||||| || |||||||||||||||||||| |||   |||||||||||| |||| ||||||||| ||||||  c
aggga GG AGGGUAUUAUAUUCCCUAAa cuc   cuacacugugua gauc uguuacuua accugu  g
     a  C                    a   -au            u    c         a      cu 

Annotation confidence Low

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

1: 40415422-40415565 [+]

Mature osa-miR818a-5p

• Accession: MIMAT0056013
• Description: Oryza sativa osa-miR818a-5p mature miRNA
• Sequence: 50 - AGUAUAAUGAAUCUGGACA - 68
• Evidence: experimental ; unknown

Mature osa-miR818a-3p

• Accession: MIMAT0004063
• Description: Oryza sativa osa-miR818a-3p mature miRNA
• Sequence: 117 - AAUCCCUUAUAUUAUGGGACGG - 138
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116