Stem-loop osa-MIR818b

Accession

MI0005248

Description

Oryza sativa osa-MIR818b precursor miRNA

Literature search

11 open access papers mention osa-MIR818b
(20 sentences)

Sequence

84485 reads, 273.0 reads per million, 142 experiments

CCUCCGUCCCAUAAUAUAAGAGAUuuuagauggaugugauacaucucaguacaaugaaucuguacuauaauauaucauauccauccaaaAUCCCUUAUAUUAUGGGACGGAGG
((((((((((((((((((((.((((((.(((((((((((((......((((((.......))))))......))))))))))))).)))))).))))))))))))))))))))

Structure

                    A      a             caucuc      au 
CCUCCGUCCCAUAAUAUAAG GAUuuu gauggaugugaua      aguaca  g
|||||||||||||||||||| |||||| |||||||||||||      ||||||  a
GGAGGCAGGGUAUUAUAUUC CUAaaa cuaccuauacuau      ucaugu  a
                    C      c             auaaua      cu 

Annotation confidence Medium

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

2: 4007190-4007302 [+]

Mature osa-miR818b-5p

• Accession: MIMAT0056014
• Description: Oryza sativa osa-miR818b-5p mature miRNA
• Sequence: 1 - CCUCCGUCCCAUAAUAUAAGAGAU - 24
• Evidence: experimental ; unknown

Mature osa-miR818b-3p

• Accession: MIMAT0004064
• Description: Oryza sativa osa-miR818b-3p mature miRNA
• Sequence: 90 - AUCCCUUAUAUUAUGGGACGGAGG - 113
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116